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slide seq v2  (TaKaRa)


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    Structured Review

    TaKaRa slide seq v2
    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
    Slide Seq V2, supplied by TaKaRa, used in various techniques. Bioz Stars score: 95/100, based on 130 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/slide seq v2/product/TaKaRa
    Average 95 stars, based on 130 article reviews
    slide seq v2 - by Bioz Stars, 2026-06
    95/100 stars

    Images

    1) Product Images from "A cell and transcriptome atlas of human arterial vasculature"

    Article Title: A cell and transcriptome atlas of human arterial vasculature

    Journal: Cell Genomics

    doi: 10.1016/j.xgen.2025.101034

    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP (left), slide-seq spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
    Figure Legend Snippet: Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP (left), slide-seq spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .

    Techniques Used: Marker, RNA Expression, RNA Sequencing, RNAscope, Expressing, Quantitative Proteomics



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    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
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    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
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    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
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    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
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    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
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    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
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    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
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    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
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    Image Search Results


    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP (left), slide-seq spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .

    Journal: Cell Genomics

    Article Title: A cell and transcriptome atlas of human arterial vasculature

    doi: 10.1016/j.xgen.2025.101034

    Figure Lengend Snippet: Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP (left), slide-seq spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .

    Article Snippet: Slide-Seq V2 , Curio , #CB00030 v3.1.

    Techniques: Marker, RNA Expression, RNA Sequencing, RNAscope, Expressing, Quantitative Proteomics